Marlene Oeffinger

Work

Montreal Clinical Research Institute

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Associate Research Professor

Canada

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Publications

Protocol for the purification and analysis of nuclear UFMylated proteins

STAR Protocols

journal-article

Protein UFMylation regulates early events of ribosomal DNA double-stranded break response

bioRxiv

other

Protein UFMylation regulates early events during ribosomal DNA-damage response

Cell Reports

journal-article

Protein UFMylation regulates early events of ribosomal DNA double-stranded break response

preprint

The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity

RNA Biology

journal-article

The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity

RNA Biology

journal-article

Differential affinity purification and mass spectrometry analysis of two nuclear pore complex isoforms in yeast S. cerevisiae

STAR Protocols

journal-article

Special focus on the ribosome life cycle

RNA Biology

journal-article

Differential affinity purification and mass spectrometry analysis of two nuclear pore complex isoforms in yeast S. cerevisiae

STAR Protocols

journal-article

Miniature RNAs are embedded in an exceptionally protein-rich mitoribosome via an elaborate assembly pathway

Nucleic Acids Research

journal-article

Miniature RNAs are embedded in an exceptionally protein-rich mitoribosome via an elaborate assembly pathway

Nucleic Acids Research

journal-article

A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology

RNA Biology

journal-article

Adaptive partitioning of a gene locus to the nuclear envelope in Saccharomyces cerevisiae is driven by polymer-polymer phase separation

Nature Communications

journal-article

Publisher Correction: Adaptive partitioning of a gene locus to the nuclear envelope in Saccharomyces cerevisiae is driven by polymer-polymer phase separation (Nature Communications, (2023), 14, 1, (1135), 10.1038/s41467-023-36391-6)

Nature Communications

journal-article

Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pore complexes in budding yeast

Molecular Cell

journal-article

Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pore complexes in budding yeast

Molecular Cell

journal-article

Erratum: Author Correction: GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors (Communications biology (2021) 4 1 (1356))

Communications biology

journal-article

Identification and Characterization of the Interaction Between the Methyl-7-Guanosine Cap Maturation Enzyme RNMT and the Cap-Binding Protein eIF4E

Journal of Molecular Biology

journal-article

RbgA ensures the correct timing in the maturation of the 50S subunits functional sites

Nucleic Acids Research

journal-article

Single-Step Affinity Purification (ssAP) and Mass Spectrometry of Macromolecular Complexes in the Yeast S. cerevisiae

Methods in Molecular Biology

book-chapter

Targeted Cross-Linking Mass Spectrometry on Single-Step Affinity Purified Molecular Complexes in the Yeast Saccharomyces cerevisiae

Methods in Molecular Biology

book-chapter

Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pores in budding yeast

other

Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pores in budding yeast

bioRxiv

other

Choosing the right exit: How functional plasticity of the nuclear pore drives selective and efficient mRNA export

WIREs RNA

journal-article

Choosing the right exit: How functional plasticity of the nuclear pore drives selective and efficient mRNA export

Wiley Interdisciplinary Reviews: RNA

journal-article

Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea

Nucleic Acids Research

journal-article

Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea

Nucleic Acids Research

journal-article

GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors

Communications Biology

journal-article

GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors

bioRxiv

other

Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2

Nucleic Acids Research

journal-article

It's Not the Destination, It's the Journey: Heterogeneity in mRNA Export Mechanisms

Advances in Experimental Medicine and Biology

journal-article

It’s Not the Destination, It’s the Journey: Heterogeneity in mRNA Export Mechanisms

Advances in Experimental Medicine and Biology

book-chapter

Live-Cell Imaging of mRNP-NPC Interactions in Budding Yeast

Methods in Molecular Biology

journal-article

Live-Cell Imaging of mRNP–NPC Interactions in Budding Yeast

Methods in Molecular Biology

book-chapter

Preface

Advances in Experimental Medicine and Biology

book

Structural studies of the eIF4E-VPg complex reveal a direct competition for capped RNA: Implications for translation

Proceedings of the National Academy of Sciences

journal-article

Structural studies of the eIF4E–VPg complex reveal a direct competition for capped RNA: Implications for translation

Proceedings of the National Academy of Sciences of the United States of America

journal-article

The Biology of mRNA: Structure and Function Preface

Advances in Experimental Medicine and Biology

journal-article

Senescence-associated ribosome biogenesis defects contributes to cell cycle arrest through the Rb pathway

Nature Cell Biology

journal-article

Senescence-associated ribosome biogenesis defects contributes to cell cycle arrest through the Rb pathway

Nature Cell Biology

journal-article

Stabilization of poly(A)-RNA species by multiple initiating events leads to improper RNA processing and a generalized disruption in nuclear homeostasis

Molecular Biology of the Cell

journal-article

The RNA chaperone La promotes pre-TRNA maturation via indiscriminate binding of both native and misfolded targets

Nucleic Acids Research

journal-article

DDX54 regulates transcriptome dynamics during DNA damage response

Genome Research

journal-article

DDX54 regulates transcriptome dynamics during DNA damage response

Genome Research

journal-article

High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast

Nature Communications

journal-article

High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast

Nature Communications

journal-article

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism

Nucleic Acids Research

journal-article

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism

Nucleic Acids Research

journal-article

The RNA chaperone La promotes pre-TRNA maturation via indiscriminate binding of both native and misfolded targets

Nucleic Acids Research

journal-article

The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors

RNA

journal-article

The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors

RNA

journal-article

The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors

RNA

journal-article

Imaging single mRNAs to study dynamics of mRNA export in the yeast Saccharomyces cerevisiae

Methods

journal-article

Imaging single mRNAs to study dynamics of mRNA export in the yeast Saccharomyces cerevisiae

Methods

journal-article

Moulding the ribosome

Nature

journal-article

Structural biology: Moulding the ribosome

Nature

journal-article

Nucleolin and nucleophosmin: nucleolar proteins with multiple functions in DNA repair

Biochemistry and Cell Biology

journal-article

Nucleolin and nucleophosmin: Nucleolar proteins with multiple functions in DNA repair1

Biochemistry and Cell Biology

journal-article

Single-step affinity purification (ssAP) and mass spectrometry of macromolecular complexes in the Yeast S. cerevisiae

Methods in Molecular Biology

book-chapter

Targeted cross-linking-mass spectrometry determines vicinal interactomes within heterogeneous RNP complexes

Nucleic Acids Research

journal-article

Targeted cross-linking-mass spectrometry determines vicinal interactomes within heterogeneous RNP complexes

Nucleic Acids Research

journal-article

Emerging properties of nuclear RNP biogenesis and export

Current Opinion in Cell Biology

journal-article

Emerging properties of nuclear RNP biogenesis and export

Current Opinion in Cell Biology

journal-article

The nuclear basket mediates perinuclear mRNA scanning in budding yeast

The Journal of Cell Biology

journal-article

The nuclear basket mediates perinuclear mRNA scanning in budding yeast

Journal of Cell Biology

journal-article

A robust pipeline for rapid production of versatile nanobody repertoires

Nature Methods

journal-article

A robust pipeline for rapid production of versatile nanobody repertoires

Nature Methods

journal-article

Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs

Nucleic Acids Research

journal-article

To the pore and through the pore: A story of mRNA export kinetics

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

journal-article

To the pore and through the pore: A story of mRNA export kinetics

Biochimica et Biophysica Acta - Gene Regulatory Mechanisms

journal-article

Two steps forward-one step back: Advances in affinity purification mass spectrometry of macromolecular complexes

Proteomics

journal-article

Joining the interface: a site for Nmd3 association on 60S ribosome subunits

The Journal of Cell Biology

journal-article

Joining the interface: A site for Nmd3 association on 60S ribosome subunits

Journal of Cell Biology

journal-article

Rrp17p Is a Eukaryotic Exonuclease Required for 5 ' End Processing of Pre-60S Ribosomal RNA

Molecular Cell

journal-article

Rrp17p Is a Eukaryotic Exonuclease Required for 5′ End Processing of Pre-60S Ribosomal RNA

Molecular Cell

journal-article

Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes

Genes & Development

journal-article

Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes

Genes and Development

journal-article

Comprehensive analysis of diverse ribonucleoprotein complexes

Nature Methods

journal-article

Comprehensive analysis of diverse ribonucleoprotein complexes

Nature Methods

journal-article

Yeast Rrp14p is required for ribosomal subunit synthesis and for correct positioning of the mitotic spindle during mitosis

Nucleic Acids Research

journal-article

Yeast Rrp14p is required for ribosomal subunit synthesis and for correct positioning of the mitotic spindle during mitosis

Nucleic Acids Research

journal-article

I-DIRT, A General Method for Distinguishing between Specific and Nonspecific Protein Interactions

Journal of Proteome Research

journal-article

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

Journal of Proteome Research

journal-article

A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits

Genes & Development

journal-article

A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits

Genes and Development

journal-article

Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits

RNA

journal-article

Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits

RNA

journal-article

Nob1p is required for cleavage of the 3 ' end of 18S rRNA

Molecular and Cellular Biology

journal-article

Nob1p is required for cleavage of the 3′ end of 18S rRNA

Molecular and Cellular Biology

journal-article

Ribosome synthesis and the cell-cycle: Integration or opportunism?

Yeast

journal-article

Yeast Nop15p is an RNA-binding protein required for pre-rRNA processing and cytokinesis

The EMBO Journal

journal-article

Yeast Nop15p is an RNA-binding protein required for pre-rRNA processing and cytokinesis

EMBO Journal

journal-article

Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis

RNA

journal-article

Yeast Pescadillo is required for multiple activities during 60s ribosomal subunit synthesis

RNA

journal-article

Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis (vol 8, pg 626, 2002)

RNA

journal-article

Erratum: Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis (RNA (2002) 8 (626-636))

RNA

journal-article